View the Project on GitHub COG-UK/docs

Updated 2021-04-16 by @samstudio8

What happens to uploaded data on CLIMB


The CLIMB QC pipeline

Data uploaded by users to CLIMB with sufficient metadata is periodically pulled through the elan nextflow pipeline. elan is responsible for basic quality checking including the following:

Once elan has finished, the following artifacts are automatically published with a version number based on the date:

Data is automatically discarded by the following criteria (QC spec v2 2021-04-16):

Basic QC (COG-UK dataset, ENA uploads)

High Quality QC (COG-UK high QC dataset, GISAID uploads)

Published 2020-03-29. Updated 2021-04-16. Page maintainer @samstudio8.